Escher
1. Getting Started
1.1. Introduction
1.2. The launch page
1.3. The menu bar
1.4. Loading and saving maps
1.5. Loading models
1.6. Loading reaction, gene, and metabolite data
1.7. Editing and building
1.8. View options
1.9. The button bar
1.10. Settings
2. Escher, COBRA, and COBRApy
2.1. Maps and models
2.2. What is JSON and why do we use it?
2.3. Escher, SBML, and SBGN
3. Escher in the IPython Notebook
4. Convert Maps
5. Developing with Escher
5.1. Using the static javascript files
5.2. Running the local server
5.3. Building and testing Escher
5.4. The Escher file format
6. Contributing Maps
7. JavaScript API
8. Python API
8.1. Cache
Escher
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Index
B
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C
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D
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E
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G
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L
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O
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R
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S
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T
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V
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Z
B
brush_mode() (built-in function)
build_mode() (built-in function)
Builder (class in escher)
C
clear_cache() (in module escher)
D
display_in_browser() (escher.Builder method)
display_in_notebook() (escher.Builder method)
E
escher (module)
escher.Builder() (class)
G
get_cache_dir() (in module escher)
L
list_available_maps() (in module escher)
list_available_models() (in module escher)
list_cached_maps() (in module escher)
list_cached_models() (in module escher)
load_map() (built-in function)
load_model() (built-in function)
O
option.enable_keys (option attribute)
options.allow_building_duplicate_reactions (options attribute)
options.and_method_in_gene_reaction_rule (options attribute)
options.enable_editing (options attribute)
options.enable_search (options attribute)
options.fill_screen (options attribute)
options.first_load_callback (options attribute)
options.gene_data (options attribute)
options.gene_font_size (options attribute)
options.hide_secondary_metabolites (options attribute)
options.highlight_missing (options attribute)
options.identifiers_on_map (options attribute)
options.marker_radius (options attribute)
options.menu (options attribute)
options.metabolite_compare_style (options attribute)
options.metabolite_data (options attribute)
options.metabolite_no_data_color (options attribute)
options.metabolite_no_data_size (options attribute)
options.metabolite_scale (options attribute)
options.metabolite_styles (options attribute)
options.never_ask_before_quit (options attribute)
options.primary_metabolite_radius (options attribute)
options.reaction_compare_style (options attribute)
options.reaction_data (options attribute)
options.reaction_no_data_color (options attribute)
options.reaction_no_data_size (options attribute)
options.reaction_scale (options attribute)
options.reaction_styles (options attribute)
options.scroll_behavior (options attribute)
options.secondary_metabolite_radius (options attribute)
options.show_gene_reaction_rules (options attribute)
options.starting_reaction (options attribute)
options.unique_map_id (options attribute)
R
rotate_mode() (built-in function)
S
save_html() (escher.Builder method)
set_gene_data() (built-in function)
set_metabolite_data() (built-in function)
set_reaction_data() (built-in function)
T
text_mode() (built-in function)
V
view_mode() (built-in function)
Z
zoom_mode() (built-in function)
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v: v1.1.2
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